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Contents of README:RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. The output of the program is a detailed annotation of the repeats that are present in the query sequence as well as a modified version of the query sequence in which all the annotated repeats have been masked (default: replaced by Ns). Currently over 56% of human genomic sequence is identified and masked by the program. Sequence comparisons in RepeatMasker are performed by one of several popular search engines including: - nhmmer (part of 'HMMER', available on SBo) - Cross_Match. Due to licensing, you should obtain this yourself: http://www.phrap.org - ABBlast/WUBlast. Due to licensing, you should obtain this yourself: https://blast.advbiocomp.com/licensing/ - RMBlast (found as 'ncbi-rmblastn' on SBo) RepeatMasker makes use of curated libraries of repeats and currently supports Dfam (profile HMM library derived from Repbase sequences) and Repbase, a service of the Genetic Information Research Institute. WARNING! Due to the bundled databases, the installed size of this is 2.1 GB! NOTE! The package is installed in /opt. After install go fo /opt/RepeatMasker and run the RepeatMasker Configuration Program: # perl ./configure See README.SLACKWARE for details. |
Name Last modified Size
Parent Directory - README 03-Jun-2022 22:47 1.3K README.SLACKWARE 03-Jun-2022 22:47 804 References 03-Jun-2022 22:47 285 RepeatMasker-4.1.2-p1.tar.gz 03-Jun-2022 22:59 334M RepeatMasker.SlackBuild 11-Mar-2022 06:34 3.0K RepeatMasker.info 03-Jun-2022 22:47 351 slack-desc 03-Jun-2022 22:47 1.1K
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