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Contents of README:The MEME suite: motif based sequence analysis tools The MEME Suite allows the biologist to discover novel motifs in collections of unaligned nucleotide or protein sequences, and to perform a wide variety of other motif-based analyses. The Suite supports motif- based analysis of DNA, RNA and protein sequences. It provides motif discovery algorithms using both probabilistic (MEME) and discrete models (MEME), which have complementary strengths. It also allows discovery of motifs with arbitrary insertions and deletions (GLAM2). In addition to motif discovery, the MEME Suite provides tools for scanning sequences for matches to motifs (FIMO, MAST and GLAM2Scan), scanning for clusters of motifs (MCAST), comparing motifs to known motifs (Tomtom), finding preferred spacings between motifs (SpaMo), predicting the biological roles of motifs (GOMo), measuring the positional enrichment of sequences for known motifs (CentriMo), and analyzing ChIP-seq and other large datasets (MEME-ChIP). Check README.TESTS for runing the recommended tests on the compiled executables. Here, the tests *FAIL* on a 32bit system! Check README.DATABASES for more info or if you want to install meme-suite without the databases present at build time. To cite the full MEME suite: Timothy L. Bailey, Mikael Bodén, Fabian A. Buske, Martin Frith, Charles E. Grant, Luca Clementi, Jingyuan Ren, Wilfred W. Li, William S. Noble, "MEME SUITE: tools for motif discovery and searching", Nucleic Acids Research, 37:W202-W208, 2009. To cite individual tools, please check the citation page: http://meme-suite.org/doc/cite.html |
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Parent Directory - README 04-Jun-2022 06:19 1.6K README.DATABASES 04-Jun-2022 06:19 488 README.TESTS 04-Jun-2022 06:19 938 References 12-Jan-2020 02:55 8.4K meme-5.3.3.tar.gz 04-Jun-2022 06:19 45M meme-suite.SlackBuild 11-Mar-2022 06:34 4.2K meme-suite.info 04-Jun-2022 06:19 365 slack-desc 04-Jun-2022 06:19 966
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